This package compiles a series of publicly available disease outbreak data. Data can be provided as R objects (loaded automatically when loading the package), text files distributed alongside the package, or functions generating a dataset.
The following R datasets are currently available:
## Warning in library(package, lib.loc = lib.loc, character.only = TRUE, ## logical.return = TRUE, : there is no package called 'printr'
## Warning: printr is not installed; displaying the content of 'data(...)' may ## not work
To install the current stable, CRAN version of the package, type:
To benefit from the latest features and bug fixes, install the development, github version of the package using:
Note that this requires the package devtools installed.
We will try to create a better repository and data submission system at a later stage. The purpose of the current package is only to share examplar datasets during the hackathon. Acceptable forms are: - as a
.RData files in the
data/ folder (recommended) - as a text file in the
inst/ folder - as a function loading/assembling/simulating a dataset
We use the lower case throughout, and snake_case (using underscores) to separate words for the files and dataset names, so that for a
RData object, a new dataset woud look like: `my_new_data_RData’. Try using informative names, typically using the disease first. Whenever available, order fields as: 1. disease: mandatory 2. location: optional 3. year: optional 4. sim: mandatory if this is a simulated dataset; otherwise data is assume to be an actual outbreak 5. other: (any other relevant information)