`R/subset_clusters_by_size.R`

`subset_clusters_by_size.Rd`

This function subsets an `epicontacts`

object based on defined
size(s) of clusters (clusters being groups of connected
individuals/nodes). Subsetting may be done by specifying a particular cluster
size of interest, minimum cluster size, maximum cluster size, or a range
(minimum and maximum) of cluster sizes.

subset_clusters_by_size(x, cs = NULL, cs_min = NULL, cs_max = NULL)

x | an |
---|---|

cs | cluster size to be used for subsetting |

cs_min | minimum cluster size for subsetting |

cs_max | maximum cluster size for subsetting |

An `epicontacts`

object whose contact dataframe corresponds to
all clusters of specified cluster sizes.

Nistara Randhawa (nrandhawa@ucdavis.edu)

if (require(outbreaks)) { ## build data x <- make_epicontacts(ebola_sim$linelist, ebola_sim$contacts, id="case_id", to="case_id", from="infector", directed=TRUE) ## subset based on cluster size range x_subset <- subset_clusters_by_size(x, cs_min = 12, cs_max = 15) ## subset based on single cluster size x_subset <- subset_clusters_by_size(x, cs = 12) ## subset based on minimum cluster size x_subset <- subset_clusters_by_size(x, cs_min = 10) ## subset based on maximum cluster size x_subset <- subset_clusters_by_size(x, cs_max = 9) }