earlyR 0.0.4 Unreleased

New features

  • graphs are now using ggplot2

earlyR 0.0.3 Unreleased

Bug fixes

  • fix issue #11 where the likelihood surface was incorrectly calculated. This unfortunately reverts the issue from #4

earlyR 0.0.2 Unreleased

New features

  • heat colors in the plot of lambdas have been replaced by a constant color

Bug fixes

  • fixed issue 4 relating to low log-likelihood values which resulted in constant zeros when reverted back to the likelihood scale

earlyR 0.0.1 2017-12-06

The main features of the package include:

  • get_R: a function to estimate R as well as the force of infection over time, from incidence data; output is an object of class earlyR

  • sample_R: a function to obtain a sample of likely R values

  • plot: a function to visualise earlyR objects (R or force of infection).

  • points: a function using earlyR objects to add the force of infection to an existing plot.