Resources
Developing RECON packages
If you are intersted in developing or contributing to RECON packages, we suggest you explore the rOpenSci Software Peer Review process, as well as the rOpenSci Dev Guide and Epiverse Trace.
Using RECON packages
These resources are archived lectures, tutorials and case studies formerly hosted on RECON Learn.
These resources are not necessarily up-to-date with the current package usage and some have errors or do not complile correctly, however, they still have value.
HTML/pdf/pptx files are lecture slides, while Rmd and md files are either tutorials or contain more details for lectures (regarding authorship etc.).
English
Basic VBD Modelling:
Compartmental Ebola:
Copenhagen Descriptive:
- Outbreak of gastroenteritis after a high school dinner in Copenhagen, Denmark,November 2006 (part 2) by Zhian N. Kamvar, Janetta Skarp, Alexander Spina, Patrick Keating, Thibaut Jombart
- Rmd, md
Copenhagen Intro:
- Outbreak of gastroenteritis after a high school dinner in Copenhagen, Denmark,November 2006 (part 1) by Zhian N. Kamvar, Janetta Skarp, Alexander Spina, Patrick Keating
- Rmd, md
Copenhagen Stratified:
- Outbreak of gastroenteritis after a high school dinner in Copenhagen, Denmark,November 2006 (part 4) by Zhian N. Kamvar, Janetta Skarp, Alexander Spina, Patrick Keating
- Rmd, md
Copenhagen Univariate:
- Outbreak of gastroenteritis after a high school dinner in Copenhagen, Denmark,November 2006 (part 3) by Zhian N. Kamvar, Janetta Skarp, Alexander Spina, Patrick Keating
- Rmd, md
Data Import Short:
Ebola Reconstruction:
Ebola Response:
Import Data:
Intro To R:
Intro to R:
Lecture Phylogenetics:
Modelling Public Health:
Outbreak Statistics:
Outbreakend:
Outbreaker2:
Phylogenetics:
Projections:
Real Time Response 1:
- Real-time outbreak analysis: Ebola as a case study - part 1 by Anne Cori, Natsuko Imai, Finlay Campbell, Zhian N. Kamvar, Thibaut Jombart
- Rmd, md
Real Time Response 2:
- Real-time outbreak analysis: Ebola as a case study - part 2 by Anne Cori, Natsuko Imai, Finlay Campbell, Zhian N. Kamvar, Thibaut Jombart
- Rmd, md
Real Time Response 3:
- Real-time outbreak analysis: Ebola as a case study - part 3 by Anne Cori, Natsuko Imai, Finlay Campbell, Zhian N. Kamvar, Thibaut Jombart
- Rmd, md
Reproducibility:
Stegen:
- An outbreak of gastroenteritis in Stegen, Germany, June 1998 by Amrish Baidjoe, Thibaut Jombart, Janetta Skarp, Zhian N. Kamvar, Alexander Spina, Patrick Keating
- Rmd, md
Stegen Analysis:
- An outbreak of gastroenteritis in Stegen, Germany, June 1998 (part 3) by Janetta Skarp, Zhian N. Kamvar, Alexander Spina, Patrick Keating
- Rmd, md
Stegen Descriptive:
- An outbreak of gastroenteritis in Stegen, Germany, June 1998 (part 2) by Janetta Skarp, Zhian N. Kamvar, Alexander Spina, Patrick Keating
- Rmd, md
Stegen Introduction:
- An outbreak of gastroenteritis in Stegen, Germany, June 1998 (part 1) by Janetta Skarp, Zhian N. Kamvar, Alexander Spina, Patrick Keating
- Rmd, md
TB:
Tools Analytics Pipelines:
Tools Infrastructure:
- Tools for outbreak analytics infrastructures by Thibaut Jombart
- Rmd
VBD:
Why R:
ggplot2:
Spanish
Intro to R:
- Una introducción a R y RStudio by Zulma M. Cucunuba, José M. Velasco-España, Andree Valle-Campos
- Rmd, md
Real Time Response 1:
- Análisis de brotes en tiempo real: el ébola como estudio de caso - parte 1 by Anne Cori, Natsuko Imai, Finlay Campbell, Zhian N. Kamvar, Thibaut Jombart, José M. Velasco-España
- Rmd, md
Real Time Response 2:
- Análisis de brotes en tiempo real: el ébola como estudio de caso - parte 2 by Anne Cori, Natsuko Imai, Finlay Campbell, Zhian N. Kamvar, Thibaut Jombart, José M. Velasco-España
- Rmd, md
Rmarkdown:
Spatial Analysis:
- Visualización y Análisis de datos espaciales en salud pública by Gabriel Carrasco-Escobar, Antony Barja, Jesus Quispe
- Rmd, md
VBD: