epitrix 0.3.0 Unreleased

New Functions

New Features

  • clean_labels() gains the protect argument to protect meaningful symbols in the data.
  • hash_names() now has the hashfun option that allows users to specify either a “fast” or “secure” hashing function to use (@zkamvar, #21).

New Vignettes

  • “Estimating Incubation Period” shows the use of empirical incubation dist.

New Imports

  • functions from dplyr, purrr, rlang, and tidyr are now imported.

Bug Fix

epitrix 0.2.2 2019-01-15

epitrix 0.2.1 2018-08-28

  • update documentation for compatibility with incidence 1.4.1

epitrix 0.2.0 2018-04-24

  • added function clean_labels which can be used to standardise labels in variables, removing non-ascii characters, standardising separators, and more; now used in hash_names

epitrix 0.1.2 2018-03-01

  • added salting algorithm to hash_names (issue 1)

  • fixed bug happening when using tibble inputs in hash_names (issue 2)

epitrix 0.1.1 2018-01-24

  • fit_disc_gamma now also returns the fitted discretised gamma distribution as a distcrete object

epitrix 0.1.0 2017-11-26

First release of the package! This includes the following features:

  • fit_disc_gamma: fit discretised gamma distribution

  • gamma_log_likelihood: compute gamma log likelihood

  • gamma_mucv2shapescale/gamma_shapescale2mucv: convert between different parametrisation of gamma distributions.

  • hash_names: generate hashed (‘anonymised’) labels from individual data.

  • r2R0: compute R0 from r

  • lm2R0_sample: genrate samples of R0 from a log-linear regression