vimes
  • Reference
  • Articles

Function reference

version 1.0.0

All functions

Interactive choice of cutoff points.

  • cutoff_choice_interactive

Expected distributions of distances

  • dpaircase
  • dtemporal
  • dspatial
  • dgenetic
  • dempiric

Color palettes used in vimes

  • vimes_pal1
  • palettes
  • vimes_pal2
  • vimes_pal2

Plot input data for vimes

  • plot.vimes_data

Process input data for vimes

  • vimes_data

Set up graphical options for graphs

  • vimes_graph_opt

Builds a graph from pairwise distances

  • vimes_prune

VIsualisation and Monitoring of EpidemicS

  • vimes

Contents

  • All functions

Developed by Thibaut Jombart, Anne Cori.

Site built with pkgdown.