All functions

clean_labels()

Standardise labels

empirical_incubation_dist()

Extract empirical incubation period distribution from linelist data

fit_disc_gamma()

Fit discretised distributions using ML

fit_gamma_incubation_dist()

Fit discrite gamma distribution to incubation periods

gamma_shapescale2mucv() gamma_mucv2shapescale() gamma_log_likelihood()

Reparameterise Gamma distributions

hash_names()

Anonymise data using scrypt

r2R0() lm2R0_sample()

Transform a growth rate into a reproduction number