Function reference • incidence

Data Conversion Functions for computing and converting incidence objects
`incidence()` `print(<incidence>)`	Compute incidence of events from a vector of dates.
`as.data.frame(<incidence>)` `as.incidence()`	Conversion of incidence objects
Incidence Curve Visualisation Functions for plotting incidence curves and models
`plot(<incidence>)` `add_incidence_fit()` `plot(<incidence_fit>)` `plot(<incidence_fit_list>)` `scale_x_incidence()` `make_breaks()`	Plot function for incidence objects
`incidence_pal1()` `incidence_pal1_light()` `incidence_pal1_dark()`	Color palettes used in incidence
Accessors Accessor functions for the incidence object
`get_counts()`	Get counts from an incidence object
`get_dates()`	Retrieve dates from an incidence object
`get_fit()` `get_info()`	Accessors for `incidence_fit` objects
`group_names()` `group_names<-`()	extract and set group names
`dim(<incidence>)` `get_interval()` `get_n()` `get_timespan()`	Access various elements of an incidence object
Data Manipulation Functions for manipulating incidence objects by date or group
`subset(<incidence>)` `[`(<incidence>)	Subsetting 'incidence' objects
`pool()`	Pool 'incidence' across groups
`cumulate()`	Compute cumulative 'incidence'
Parameter Estimation Functions for estimating parameters such as peak and doubling time
`bootstrap()`	Bootstrap incidence time series
`estimate_peak()`	Estimate the peak date of an incidence curve using bootstrap
`find_peak()`	Find the peak date of an incidence curve
`fit()` `fit_optim_split()` `print(<incidence_fit>)` `print(<incidence_fit_list>)`	Fit exponential models to incidence data

Reference

Data Conversion

Incidence Curve Visualisation

Accessors

Data Manipulation

Parameter Estimation